Adventures in Integrating Biobank Scale Data with Genomic, Phenotypic and Imaging Data from Other Sources

Presenting Author: Ben Busby, DNAnexus

---

ProTaxa: software to easily perform phylogenomic analyses for prokaryotic taxa

Presenting Author: Joseph Wirth, Harvey Mudd College

---

Predicting functional consequences of mutations using molecular interaction network features

Presenting Author: Kivilcim Ozturk, University of California San Diego

---

Co-evolution based machine-learning for predicting functional interactions between human genes

Presenting Author: Yuval Tabach, The Hebrew University-Hadassah Medical School

---

Scalable estimation of microbial co-occurrence networks with Variational Autoencoders

Presenting Author: James Morton, Simons Foundation

---

Geographical Support Vector Machines (GSVM) for the Analysis of Spatially Data

Presenting Author: Shachi Patel, University of Kansas Medical Center

---

sciCAN: Single-cell chromatin accessibility and gene expression data integration via Cycle-consistent Adversarial Network

Presenting Author: Yang Xu, The University of Tennessee, Knoxville

---

TADMaster: A Comprehensive Web-based Tool for Analysis of Topologically Associated Domain Detection Methods

Presenting Author: Oluwatosin Oluwadare, University of Colorado, Colorado Springs, USA

---

Error Modelled Gene Expression Analysis (EMOGEA)

Presenting Author: Tobias Karakach, Tobias Karakach

---

New machine learning approaches to estimate the functional consequence of mutations in diverse human populations

Presenting Author: Yuval Itan, Icahn School of Medicine at Mount Sinai

---

Assessing Equivalent and Inverse Change in Genes between Diverse Experiments

Presenting Author: Lisa Neums, University of Kansas Medical Center

---

Recent Advances in Sequence Assembly Using Flow Decomposition

Presenting Author: Brendan Mumey, Montana State University

---

About the Research Data Alliance

Presenting Author: Stephanie Hagstrom, RDA-US

---

Crossing complexity of space-filling curves reveals new principles of genome folding

Presenting Author: Nicholas Kinney, Virginia College of Osteopathic Medicine

---

The Cultural Evolution of Vaccine Hesitancy: Modeling the Interaction between Beliefs and Vaccination Behaviors

Presenting Author: Kerri-Ann Anderson, Vanderbilt University

---

Automated and systematic verification and validation increases quality and long-term reuse of models

Presenting Author: Natasa Miskov-Zivanov, University of Pittsburgh

---

SBMLWebApp: Web-based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology Models

Presenting Author: Andreas Dräger, University of Tübingen

---

A comprehensive benchmarking of WGS-based structural variant callers

Presenting Author: Varuni Sarwal, University of California Los Angeles

---

Exploring hypotheses of small cell lung cancer growth mechanisms using Bayesian mutlimodel inference

Presenting Author: Samantha Beik, Vanderbilt University

---

Identifying and Classifying Goals for Scientific Knowledge

Presenting Author: MAYLA BOGUSLAV, University of Colorado Anschutz Medical Campus

---

The Egyptian Center for Genome and Microbiome Research: A Funded North-South Collaboration for Capacity Building and Genomics Research Sustainability

Presenting Author: Ramy Aziz, Faculty of Pharmacy, Cairo University

---

The Ramp Atlas: Facilitating tissue-specific ramp sequence analyses across humans and SARS-CoV-2

Presenting Author: Justin Miller, University of Kentucky; Brigham Young University

---

The systematic assessment for the completeness of metadata information accompanying omics studies

Presenting Author: Yu-Ning Huang, University of Southern California

---

A Tale of Two Systems: Influenza and COVID-19

Presenting Author: Christian Forst, Icahn School of Medicine at Mount Sinai, New York, NY

---

Genomic epidemiology of the SARS-CoV-2 Delta variant in Arizona USA

Presenting Author: Matthew Scotch, Arizona State University

---

Predicting protein level changes from transcript level data

Presenting Author: Edward Lau, University of Colorado School of Medicine

---

Morphology and gene expression profiling provide complementary information for mapping cell state

Presenting Author: Gregory Way, University of Colorado Anschutz

---

Improving the interpretability of random forest models of genetic association in the presence of non-additive interactions

Presenting Author: Alena Orlenko, University of Pennsylvania

---

Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response

Presenting Author: Meghana Pagadala, UCSD

---

GENOME SKIMMING BY SHOTGUN SEQUENCING TO ADDRESS LONGSTANDING QUESTIONS OF LICHEN SPECIES DIVERSITY

Presenting Author: Jeffrey Clancy, Brigham Young University

---

Response Signatures of SARS-CoV2 Infection Identified Using Deep Learning Approaches on Single Cell RNA-Seq Data

Presenting Author: Mario Flores, University of Texas at San Antonio

---

Multispecies cities in the Anthropocene: bioremediation and biomining potential of the Gowanus Canal Microbiome, an urban Superfund site

Presenting Author: Chandrima Bhattacharya, Weill Cornell Medicine

---

Higher-order Markov models for metagenomic sequence classification

Presenting Author: Rajeev Azad, University of North Texas

---

DEGAS: Mapping clinical metrics to spatial transcriptomics with deep learning

Presenting Author: Justin Couetil, Indiana University School of Medicine

---

Scientific Reproducibility and Research Automation with QIIME 2 Provenance Replay

Presenting Author: Christopher Keefe, Northern Arizona University

---

Robustness and reproducibility of computational genomics tools

Presenting Author: Serghei Mangul, USC

---

Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning

Presenting Author: yuzhou Chang, The Ohio State University

---

Identifying Viruses from Host Genomes and Deep Learning for Prediction of Viral Integration Sites

Presenting Author: Zhongming Zhao, University of Texas Health Science Center at Houston

---

Quantification and visualization of the tumor microenvironment heterogeneity from spatial transcriptomic experiments

Presenting Author: Oscar Ospina, Moffitt Cancer Center

---

Inferring Pediatric Sickle Disease Genotypes from Molecular Mechanistic Knowledge

Presenting Author: Tiffany Callahan, University of Colorado Anschutz Medical Campus

---

COPD subtypes identified from blood RNA-seq data using single sample gene network perturbations

Presenting Author: Panayiotis (Takis) Benos, University of Pittsburgh

---