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Poster Session List
P01
Evolutionary Action is a unifying framework for assessing missense variant structures within and across phyla
Presenting Author: Nicholas Abel, Baylor College of Medicinetop
P02
Discovering Subclones in Tumors Sequenced at Standard Depths
Presenting Author: Navid Ahmadinejad, Arizona State Universitytop
P03
Meta-analysis and Machine Learning Classification for Dilated Cardiomyopathy Using Cardiac Transcriptomics Data
Presenting Author: Ahmad Alimadadi, Program in Bioinformatics and Department of Physiology and Pharmacology, University of Toledo College of Medicine and Life Sciencestop
P04
A web application for annotating tabular data with terms from biomedical ontologies
Presenting Author: Elizabeth Anderson, Brigham Young Universitytop
P05
Enabling structure-based data-driven selection of targets for cancer immunotherapy
Presenting Author: Dinler Antunes, Rice Universitytop
P06
Abstract Withdrawn
P07
Abstract Withdrawn
P08
Pathway-Regularized Matrix Factorization
Presenting Author: Aaron Baker, University of Wisconsin-Madisontop
P09
“The Use of Machine Learning for Modeling a Clinical Decision Support for Predicting Postpartum Depression”
Presenting Author: Houda Benlhabib, University of Washington, Biomedical Informatics and Medical Educationtop
P10
Bridging the Bioinformatics Knowledge Gap in the Pediatric Cancer Research Community with the Childhood Cancer Data Lab workshops
Presenting Author: Chante Bethell, Childhood Cancer Data Lab (Alex's Lemonade Stand Foundation)top
P11
Map and model — moving from observation to prediction in toxicogenomics
Presenting Author: Wibke Busch, Helmholtz Centre for Environmental Research - UFZtop
P12
Data Discovery Engine: A web-based toolset for maximizing data discoverability and promoting reusable data-sharing best practices
Presenting Author: Marco Cano, Scripps Researchtop
P13
A Machine Learning tool can assign function to phage proteins
Presenting Author: Vito Cantu, San Diego State Universitytop
P14
Identification of a lead compound for selective inhibition of Nav1.7 to treat chronic pain
Presenting Author: Sharat Chandra, Duke Universitytop
P15
Deep Learning based Multi-view model for deciphering gene regulatory keywords
Presenting Author: Pramod Bharadwaj Chandrashekar, Arizona State Universitytop
P16
Landmark and Cancer-Relevant Gene Selection of RNA Sequencing Data for Survival Analysis
Presenting Author: Carly Clayman, Penn State University - Great Valleytop
P17
Polygenic Risk Score Knowledge Base: A Web-based Application for Calculating Polygenic Risk Scores
Presenting Author: Matthew Cloward, Brigham Young Universitytop
P18
A comprehensive analysis of orthologous genes across all domains
Presenting Author: Lauren Cutler, Brigham Young Universitytop
P19
Using Mendelian Randomization to Assess Disease Causality
Presenting Author: Louisa Dayton, Brigham Young Universitytop
P20
Abstract Withdrawn
P21
A Novel One-Class classification Approach to Accurately Predict Disease-Gene Association
Presenting Author: Abdollah Dehzangi, Morgan State Universitytop
P22
Pipelines, Workflows and Virtualization to Build Institutional Informatics Capacity
Presenting Author: Aaron Dickey, Unites States Department of Agriculturetop
P23
Transcriptional changes observed in a mouse contained infection model of TB identify human LTB+ individuals at low risk of progression to active disease.
Presenting Author: Fergal Duffy, Seattle Children's Research Institutetop
P24
Apollo: an efficient tool to collaboratively refine and attribute genome-wide genomic annotations
Presenting Author: Nathan Dunn, University of California, Berkeleytop
P25
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
Presenting Author: Robert Edwards, San Diego State Universitytop
P26
Urine pellet heterogeneity requires meticulous balancing of RNAseq libraries
Presenting Author: Felix Eichinger, University of Michigantop
P27
Using Mutual Information to Validate Functional Interactions Between Clusterin and Amyloid Precursor Protein
Presenting Author: Austin Gale, Brigham Young Universitytop
P28
Computational Discovery of Novel Phages in the Human Gut Metagenome
Presenting Author: Melissa Giluso, San Diego State Universitytop
P29
Benchmarking Viral Identification Tools in Complex Simulated Metagenomes
Presenting Author: Cody Glickman, University of Colorado Anschutztop
P30
The design of an interactive lung map for studying premalignant lesions in the lung over time
Presenting Author: Carsten Görg, Colorado School of Public Healthtop
P31
pipelineTools: RStudio based NGS workflow, reporting and teaching system
Presenting Author: Graham Hamilton, University of Glasgowtop
P32
Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Presenting Author: Daniel Himmelstein, University of Pennsylvaniatop
P33
CUBAP: An Interactive Web Portal for Analyzing Codon Usage Bias Across Populations
Presenting Author: Matthew Hodgman, Brigham Young Universitytop
P34
Food Preservatives Induce Proteobacteria Dysbiosis in Human-Microbiota Associated Nod2-deficient Mice
Presenting Author: Tomas Hrncir, The Czech Academy of Sciencestop
P35
Predicting Clinical Dementia Rating Using Blood RNA Levels
Presenting Author: Erik Huckvale, Brigham Young Universitytop
P36
Polly Discover: Integration of public omics data and metadata using machine learning to enable asset discovery
Presenting Author: Brian Dranka, Elucidatatop
P37
Hypergraph Analytics for Computational Virology
Presenting Author: Cliff Joslyn, Pacific Northwest National Laboratorytop
P38
Analyzing the Signature of GPCR conformational Changes
Presenting Author: rafeed khleif, California State University Northridgetop
P39
HIGH RESOLUTION PROTEOMICS AND GENOMICS OF CNDP1 REPEAT VARIANTS LINKED TO DIABETIC NEPHROPATHY
Presenting Author: Nicholas Kinney, Edward Via College of Osteopathic Medicinetop
P40
Combining the Evolutionary Trace Algorithm and Covariation Metrics Yields Improved Structural Predictions
Presenting Author: Daniel Konecki, Baylor College of Medicinetop
P41
Abstract Withdrawn
P42
Expanding polygenic risk scores to include automatic genotype encodings and gene-gene interactions
Presenting Author: Trang Le, University of Pennsylvaniatop
P43
The impact of undesired technical variability on large-scale data compendia
Presenting Author: Alexandra Lee, Genomics and Computational Biology Graduate Program, University of Pennsylvania, Philadelphia, PA, USA; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania,top
P44
Abstract Withdrawn
P45
PyFBA: from Genomics to Metabolomics
Presenting Author: Shane Levi, San Diego State Universitytop
P46
Abstract Withdrawn
P47
Effective Targeted Drug Prediction for Cancer Based on Genetic Mutations
Presenting Author: Darsh Mandera, Jesuit High Schooltop
P48
Identifying Protein-Metabolite Networks associated with COPD Phenotypes
Presenting Author: Emily Mastej, University of Colorado Anschutz Medical Campustop
P49
Identification of cell signaling pathways based on biochemical reaction kinetics repositories
Presenting Author: Gustavo Matos, University of Sao Paulotop
P50
Using Ramp Sequences to Identify Causes of Disease Association
Presenting Author: Lauren McKinnon, Brigham Young Universitytop
P51
Predicting progression-free interval for cancer patients based on heterogeneous combinations of high-throughput molecular data
Presenting Author: Nathan Mella, Brigham Young Universitytop
P52
Codon Usage Biases Have Significant Implications in Population Stratification
Presenting Author: Taylor Meurs, Brigham Young Universitytop
P53
Containerized pipeline for the identification of compound heterozygous variants in trios
Presenting Author: Dustin Miller, Brigham Young Universitytop
P54
Pathogenic Synonymous Variants Are More Likely to Affect Codon Usage Biases than Benign Synonymous Variants
Presenting Author: Justin Miller, Brigham Young Universitytop
P55
Filtering, classification, and selection of new knowledge for model assembly and extension
Presenting Author: Natasa Miskov-Zivanov, University of Pittsburghtop
P56
HiC-Pipeline: a Kepler and Spark-based scalable workflow for normalized contact map creation
Presenting Author: Sanjay Nagaraj, Baylor College of Medicinetop
P57
Abstract Withdrawn
P58
Robust discovery of causal gene networks via measurement error estimation and correction
Presenting Author: Manikandan Narayanan, Indian Institute of Technology Madrastop
P59
Reusing label functions to extract multiple types of relationships from biomedical abstracts at scale
Presenting Author: David Nicholson, University of Pennsylvaniatop
P60
Model selection for clinical metabolomics: comparing the power of different optimization approaches for coronary artery disease diagnosis prediction.
Presenting Author: Alena Orlenko, University of Pennsylvaniatop
P61
The Utility of Polygenic Risk Scores in High-risk Pedigrees
Presenting Author: Madeline Page, Brigham Young Universitytop
P62
Abstract Withdrawn
P63
Medication Profiling through Tensor Factorization: A case study on commercial pharmacy claims
Presenting Author: Yubin Park, WithMe Health, Inc.top
P64
Evolutionary Action as a Tool for Quantifying Differentiation Across the Primate Family Tree
Presenting Author: Harley Peters, Baylor College of Medicinetop
P65
Assessing long-read correction and polishing strategies for genome assembly
Presenting Author: Brandon Pickett, Brigham Young Universitytop
P66
Abstract Withdrawn
P67
Different Metabolic RNA Levels Exist in Alzheimer’s Disease Brains
Presenting Author: Karl Ringger, Brigham Young Universitytop
P68
EFFECT OF AN AXIALLY ORIENTED ELECTRIC DIPOLE MOMENT ON THE AMYLOID-ß(25-35) AGGREGATION AND CYTOTOXICITY
Presenting Author: Eduardo Romero, university of central floridatop
P69
Deep learning enables in silico chemical-effect prediction
Presenting Author: Jana Schor, Helmholtz Centre for Environmental Research - UFZtop
P70
An online end-to-end pipeline for virus phylogeography that leverages Natural Language Processing for finding host locations
Presenting Author: Matthew Scotch, Arizona State Universitytop
P71
Open PBTA: Collaborative analysis of the Pediatric Brain Tumor Atlas
Presenting Author: Joshua Shapiro, Childhood Cancer Data Lab (Alex's Lemonade Stand Foundation)top
P72
Technical Bias Correction of Sequencing Libraries Using Wavelet Transform Analysis and Clustering
Presenting Author: Rutendo Sigauke, Univeristy of Coloradotop
P73
geneHarmony: An Interactive Web Application that Automates the Manual Process of Bacteriophage Genome Annotation
Presenting Author: Erica Suh, Brigham Young Universitytop
P74
Natural Language Processing (NLP) in FDA Adverse Event Reporting System (FAERS) to Improve Extraction of Rare, Severe Adverse Drug Event-Product Pairs from Unstructured Data: Stevens - Johnson Syndrome and Toxic Epidermal Necrolysis (SJS/TEN) as an E
Presenting Author: Katherine Sullivan, University of Colorado, Anschutz Medical Campustop
P75
MetaPro: A scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
Presenting Author: Billy Taj, Hospital for Sick Childrentop
P76
A review on multiple sequence alignment algorithms
Presenting Author: Alice Tan, White Oaks Secondary Schooltop
P77
Computational Analysis of Kinesin Mutations Implicated in Hereditary Spastic Paraplegias
Presenting Author: Shaolei Teng, Howard Universitytop
P78
A pan-cancer 3-gene signature to predict dormancy
Presenting Author: Ivy Tran, Rutgers University - Camdentop
P79
Identifying optimal mouse models for human asthma using a novel modeling approach
Presenting Author: Yihsuan Tsai, University of North Carolina at Chapel Hilltop
P80
Mitochondrial DNA Deletions and Copy Number in Whole Genome Sequencing (WGS) Data: Analyses of Aging and Parkinson’s Disease using Brain and Blood
Presenting Author: David Tyrpak, University of Southern Californiatop
P82
Mondo Disease Ontology: harmonizing disease concepts around the world
Presenting Author: Nicole Vasilevsky, Oregon Health & Science Universitytop
P83
Giving credit where credit is due: How to make more meaningful connections between people and their roles, work, and impact
Presenting Author: Nicole Vasilevsky, Oregon Health & Science Universitytop
P84
Leveraging Familial-based Relationships for Rare Variant Discovery
Presenting Author: Liz Ward, Brigham Young Universitytop
P85
Identifying Functional Relationships Using Protein Coevolution
Presenting Author: Katrisa Ward, Brigham Young Universitytop
P86
Abstract Withdrawn
P87
Optimizing storage and querying of massive biological datasets of a tabular nature
Presenting Author: James Wengler, Brigham Young Universitytop
P88
Biotherapeutic Protein Immunogenicity Risk Assessment with TCPro
Presenting Author: Osman Yogurtcu, FDAtop
P89
Abstract Withdrawn
P90
Structuring and crawling distributed biomedical metadata using schema.org standard
Presenting Author: Xinghua Zhou, The Scripps Research Institutetop
P91
Cellular life from the three domains and viruses are transcriptionally active in a high-salt desert community
Presenting Author: Gherman Uritskiy, Johns Hopkinstop