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Poster Session List
P01
Simplifying biological data access for data science
Presenting Author: David Adams, Brigham Young Universitytop
P02
Dynamical comparison between Hemoglobin and Myoglobin reveals the affects of quaternary structure of Hemoglobin on the intrinsic dynamics of its subunits
Presenting Author: Rotem Aharoni, Ariel Universitytop
P03
Convolutional Neural Networks In Classifying Cancer Through DNA Methylation
Presenting Author: Satya Avva, Saamatop
P04
Homologous Inter-Domain Segments in Protein Families
Presenting Author: Dylan Barth, University of Nevada Las Vegastop
P05
GPCR-PEnDB: A database of protein sequences and derived features to facilitate prediction and classification of G protein-coupled receptors
Presenting Author: Khodeza Begum, University of Texas at El Pasotop
P06
A Data Quality Testing Tool for Cross-institutional OMOP Electronic Health Record Data Repositories
Presenting Author: Timothy Bergquist, University of Washingtontop
P07
Med2Mech: Neural-Symbolic Representation of Molecular Mechanisms Underlying Pediatric Disease
Presenting Author: Tiffany Callahan, University of Colorado Denver Anschutz Medical Campustop
P08
Cell4D: a Spatial Stochastic Simulator for Biological Modeling
Presenting Author: Donny Chan, University of Torontotop
P09
REAL-neo, a comprehensive neoantigen prediction and prioritization pipeline using tumor sequencing data
Presenting Author: Yesesri Cherukuri, Mayo Clinictop
P10
NaVARgator: A bioinformatics program to cluster phylogenetic trees and identify representative variants
Presenting Author: David Curran, Hospital for Sick Childrentop
P11
Identifying candidate druggable targets in canine cancer cell lines using whole exome sequencing
Presenting Author: Sunetra Das, Colorado State Universitytop
P12
Abstract Withdrawn
P13
SumSec: Accurate Prediction of Sumoylation Sites using Predicted Secondary Structure
Presenting Author: Abdollah Dehzangi, Morgan State Universitytop
P14
Leaf: A self service cohort discovery and extraction browser for mining clinical enterprise data warehouses for research and quality improvement
Presenting Author: Nicholas Dobbins, University of Washingtontop
P15
The GA4GH/DREAM Workflow Execution Challenge
Presenting Author: James Eddy, Sage Bionetworkstop
P16
A Machine Learning Classifier for Assigning Individual Patients with Systemic Sclerosis to Intrinsic Molecular Subsets
Presenting Author: Jennifer Franks, Geisel School of Medicine at Dartmouthtop
P17
ShapeShifter: Making it Easy to Transform Genomic and Transcriptomic Data from One File Format to Another
Presenting Author: Brandon Fry, Brigham Young Universitytop
P18
Using machine learning algorithms for classification of medulloblastoma subgroups based on gene expression data
Presenting Author: Sivan Gershanov, Ariel Universitytop
P19
Computational Identification and Analysis of Bacterial Virulence Factors Embedded Into Bacteriophage Genomes
Presenting Author: Cody Glickman, University of Colorado Anschutztop
P20
Harmonizing and Analyzing Clinical Trials Data in the AHA Precision Medicine Platform
Presenting Author: Carsten Goerg, University of Coloradotop
P21
Integrating pathway databases with Gene Ontology Causal Activity Models
Presenting Author: Benjamin Good, Berkeley Labstop
P22
Human Skin Biopsy Culture Model Maintains Psoriasis Disease Function and Demonstrate Pathway Engagement by Dexamethasone
Presenting Author: Shaun Grosskurth, AbbVietop
P23
How open is open? The (Re)usable Data Project assesses data licensing
Presenting Author: Melissa Haendel, Oregon Health & Science Universitytop
P24
Custom database for identifying coral symbionts
Presenting Author: Graham Hamilton, University of Glasgowtop
P25
Transcriptome analysis of cancer adjacent normal tissues reveal genes co-expressed with LINE elements
Presenting Author: Mira Han, University of Nevada Las Vegastop
P26
Refining orthology determination in RNA-seq phylogenetics
Presenting Author: Madison Hansen, American Museum of Natural Historytop
P27
Optimized hybrid assembly of mycobacterial genomes using MinION and Illumina next generation sequence reads
Presenting Author: Jo Hendrix, University of Colorado Anschutztop
P28
Predicting cancer outcomes based on gene-expression profiles more accurately with deep neural networks
Presenting Author: Kimball Hill, Brigham Young Universitytop
P29
Computational and cultural aspects of improved attribution
Presenting Author: Kristi Holmes, Northwestern Universitytop
P30
A new computational pipeline for PAR-CLIP characterizes a key immune regulatory mechanism
Presenting Author: Rachel Hovde, Chimera Bioengineeringtop
P31
Abstract Withdrawn
P32
ORCHID: a method for detecting short-range chromatin interactions in high-resolution 5C and Hi-C datasets
Presenting Author: Fei Ji, Massachusetts general hospitaltop
P33
Clustering of Protein Conformations using Parallelized Dimensionality Reduction
Presenting Author: Arpita Joshi, University of Massachusetts, Bostontop
P34
Optimizing nontuberculous mycobacteria (NTM) de novo genome assemblies for application in clinical case studies
Presenting Author: Sara Kammlade, National Jewish Healthtop
P35
PredHPI: an integrated web-server platform for the prediction and visualization of host-pathogen interactions
Presenting Author: Rakesh Kaundal, Utah State Universitytop
P36
An Automated Case Notes System for Psychiatrists Using Text Mining
Presenting Author: Nazmul Kazi, Montana State Universitytop
P37
A systems biology approach to define essential kinases in small cell lung cancer
Presenting Author: Jihye Kim, University of Colorado Denver Anschutz Medical Campustop
P38
Comparative Analysis of Germline Microsatellites in the 1,000 Genomes Project
Presenting Author: Nicholas Kinney, Virginia College of Osteopathic Medicinetop
P39
Omic profiling in healthy volunteers taking celecoxib reveals novel biomarkers regulated by cyclooxygenase-2
Presenting Author: Nicholas Kirkby, Imperial College Londontop
P40
Abstract Withdrawn
P41
Searching for translatable alternative splice isoforms in the human proteome
Presenting Author: Maggie Pui Yu Lam, University of Colorado Anschutz Medical Campustop
P42
A human disease network from gene-publication relationships on PubMed
Presenting Author: Edward Lau, Stanford Universitytop
P43
Unbiased Pathway Detection Expands Cancer Pathways
Presenting Author: Chih-Hsu Lin, Baylor College of Medicinetop
P44
Identifying HCV-Host Interactions from Amino Acids Sequences Using SVM Identifying HCV-Host Interactions from Amino Acids Sequences Using SVM
Presenting Author: Xin Liu, XuZhou Medical Universitytop
P45
Modeling the Structure of BioGRID PPI Networks
Presenting Author: Sridevi Maharaj, University of California-Irvinetop
P46
Select: A SQL-based, high-resolution selection scanning tool to Identify genomic selection signals using next-generation sequencing data
Presenting Author: Hannah Maltba, Brigham Young Universitytop
P47
Codon Pairs are Phylogenetically Conserved: Codon pairing as a novel phylogenetic character state for parsimony and alignment-free methods
Presenting Author: Lauren McKinnon, Brigham Young Universitytop
P48
ExtRamp: A novel algorithm for extracting the ramp sequence based on the tRNA adaptation index or relative codon adaptiveness
Presenting Author: Justin Miller, Brigham Young Universitytop
P49
Metabolic profiling using a UHPLC-MS/MS-based platform to quantify amines, amino acids and methylarginines in plasma from cyclooxygenase-2 knockout mice
Presenting Author: Jane Mitchell, Imperial College Londontop
P50
The characterization of different cell types using the Benford law
Presenting Author: Sne Morag, Ariel Universitytop
P51
Abstract Withdrawn
P52
Mining Heterogenous Relationships from Pubmed Abstracts Using Distant Supervision
Presenting Author: David Nicholson, University of Pennsylvaniatop
P53
Mutational impact on protein structure and function in endometrial cancer
Presenting Author: Amanda Oliphant, Brigham Young Universitytop
P54
A platform for community-scale transcriptome-wide association studies
Presenting Author: YoSon Park, Perelman School of Medicine University of Pennsylvaniatop
P55
Good Nomen: An Interactive Web Application for Cleaning Clinical Data Using Standardized Terminologies
Presenting Author: Alyssa Parker, Brigham Young Universitytop
P56
Proteomics of natural bacterial isolates powered by deep learning-based de novo identification
Presenting Author: Samuel Payne, Brigham Young Universitytop
P57
Text Mining Novel Disease- and Drug-Specific Pathways
Presenting Author: Minh Pham, Baylor College of Medicinetop
P58
A Case Study on the Effects of Noisy, Long-read Correction Approaches on Assembly Contiguity
Presenting Author: Brandon Pickett, Brigham Young Universitytop
P59
Measuring chromosome conformation
Presenting Author: Brian Ross, University of Colorado Anschutz Medical Campustop
P60
Challenges Using Electronic Medical Record for Pharmacokinetic Analysis
Presenting Author: Matthew Shotwell, Vanderbilt University Medical Centertop
P61
Measuring Transcription Factor Activity with Nascent RNA Sequencing
Presenting Author: Rutendo Sigauke, University of Colorado Anschutz Medical Campustop
P62
Addressing the compositional data problem in sequencing with a novel, robust normalization method
Presenting Author: James St. Pierre, University of Torontotop
P63
Governance Innovations for Promoting Cross-institutional Electronic Health Data Sharing
Presenting Author: Kari Stephens, University of Washingtontop
P64
Use of metadata and Bag-of-words to map measurements across observational study data
Presenting Author: Laura Stevens, University of Colorado Anschutz Medical Schooltop
P65
Visualization Tool for interactive deciphering complex genetic regulation from multi-omic data
Presenting Author: LIN TING-WEI, Linkou Chang Gung Memorial Hospitaltop
P66
anexVis: visual analytics framework for analysis of RNA expression
Presenting Author: Diem-Trang Tran, University of Utahtop
P67
Toxicant-protein relation extraction
Presenting Author: Ignacio Tripodi, University of Colorado, Bouldertop
P68
LOINC2HPO: Improving translational informatics by standardizing EHR phenotypic data using the Human Phenotype Ontology
Presenting Author: Nicole Vasilevsky, Oregon Health & Science Universitytop
P69
Exploratory Analysis of Diseased Male and Female Gene Expression Levels
Presenting Author: Clarissa White, Brigham Young Universitytop
P70
BioThings API: Building a FAIR API Ecosystem for Biomedical Knowledge
Presenting Author: Chunlei Wu, The Scripps Research Institutetop