Senior Software EngineerEMBL-EBI
United Kingdom-Cambridge
As part of the EMBL-EBI COVID-19 task force, you will be part of the team that coordinates and develops automated workflows to process SARS-CoV-2 datasets. Adapting and developing innovative workflows to process and present COVID-19 data held across EMBL-EBI archives and the wider scientific community. You will also contribute to the Google and OpenStack cloud HPC workflow platforms that automate the analysis of incoming COVID-19 data.
You will design and extend workflows, including investigating and selecting appropriate technologies, to meet the data processing and presentation needs of the projects. You will work with teams from across EMBL-EBI.
Qualifications
Experience with developing and maintaining bioinformatic pipelines
Proficiency in CI/CD principle and practice, including design, implementation, testing, maintenance, version control and deployment
Proficiency in programming languages: Bash, Python, Java / Groovy, SQL
Proficiency in Linux administration via command line
Experience with HPC workflow engines such as LSF & Slurm
Experience with workflow platforms such as Nextflow & Airflow
Experience with containerisation (Docker or similar) and orchestration
Experience with RESTful APIs
Experience with database connectivity and schema design for Relational and noSQL databases
Job Information
Start Date: August 15, 2022
Duration: Full Time
Status: Open
Contact Information
EMBL-EBI
https://www.embl.org/jobs/position/EBI02012 How To Apply:
Please submit your applications at https://www.embl.org/jobs/position/EBI02012